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Iron in PDB 9bwd: Cryo-Em Structure of Respiratory Supercomplex I

Enzymatic activity of Cryo-Em Structure of Respiratory Supercomplex I

All present enzymatic activity of Cryo-Em Structure of Respiratory Supercomplex I:
7.1.1.2;

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Iron atom in the Cryo-Em Structure of Respiratory Supercomplex I (pdb code 9bwd). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 28 binding sites of Iron where determined in the Cryo-Em Structure of Respiratory Supercomplex I, PDB code: 9bwd:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 28 in 9bwd

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Iron binding site 1 out of 28 in the Cryo-Em Structure of Respiratory Supercomplex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Respiratory Supercomplex I within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe502

b:20.0
occ:1.00
FE1 B:SF4502 0.0 20.0 1.0
SG B:CYS425 1.1 95.8 1.0
S3 B:SF4502 2.3 20.0 1.0
S2 B:SF4502 2.3 20.0 1.0
S4 B:SF4502 2.3 20.0 1.0
FE3 B:SF4502 2.7 20.0 1.0
FE4 B:SF4502 2.7 20.0 1.0
FE2 B:SF4502 2.7 20.0 1.0
CB B:CYS425 2.8 95.8 1.0
N B:CYS425 3.6 95.8 1.0
CA B:CYS425 3.7 95.8 1.0
SG B:CYS379 3.7 96.1 1.0
SG B:CYS382 3.8 97.4 1.0
S1 B:SF4502 3.9 20.0 1.0
CB B:LEU427 4.0 97.5 1.0
CG B:PRO223 4.2 97.1 1.0
CD1 B:ILE205 4.2 96.9 1.0
SG B:CYS385 4.3 98.1 1.0
C B:CYS425 4.3 95.8 1.0
N B:LEU427 4.5 97.5 1.0
O B:CYS425 4.6 95.8 1.0
CD B:PRO223 4.6 97.1 1.0
CB B:CYS385 4.7 98.1 1.0
CA B:LEU427 4.8 97.5 1.0
C B:ILE424 4.9 95.8 1.0
N B:GLY428 4.9 97.1 1.0
CB B:CYS379 5.0 96.1 1.0
N B:ALA426 5.0 95.6 1.0
CG B:LEU427 5.0 97.5 1.0

Iron binding site 2 out of 28 in 9bwd

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Iron binding site 2 out of 28 in the Cryo-Em Structure of Respiratory Supercomplex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Respiratory Supercomplex I within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe502

b:20.0
occ:1.00
FE2 B:SF4502 0.0 20.0 1.0
SG B:CYS385 1.6 98.1 1.0
S4 B:SF4502 2.3 20.0 1.0
S1 B:SF4502 2.3 20.0 1.0
S3 B:SF4502 2.3 20.0 1.0
CB B:CYS385 2.5 98.1 1.0
FE4 B:SF4502 2.7 20.0 1.0
FE1 B:SF4502 2.7 20.0 1.0
FE3 B:SF4502 2.7 20.0 1.0
SG B:CYS382 3.6 97.4 1.0
OG B:SER378 3.6 97.2 1.0
SG B:CYS425 3.6 95.8 1.0
SG B:CYS379 3.7 96.1 1.0
S2 B:SF4502 3.9 20.0 1.0
CA B:CYS385 3.9 98.1 1.0
CD2 B:LEU427 4.1 97.5 1.0
N B:CYS379 4.4 96.1 1.0
CB B:LEU427 4.5 97.5 1.0
C B:CYS385 4.5 98.1 1.0
N B:GLY380 4.7 96.2 1.0
N B:ARG386 4.7 98.1 1.0
CB B:SER378 4.7 97.2 1.0
CG B:LEU427 4.8 97.5 1.0
N B:GLY428 4.8 97.1 1.0
N B:CYS385 4.9 98.1 1.0
CA B:SER378 4.9 97.2 1.0
CB B:CYS379 5.0 96.1 1.0

Iron binding site 3 out of 28 in 9bwd

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Iron binding site 3 out of 28 in the Cryo-Em Structure of Respiratory Supercomplex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Respiratory Supercomplex I within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe502

b:20.0
occ:1.00
FE3 B:SF4502 0.0 20.0 1.0
SG B:CYS379 1.1 96.1 1.0
S1 B:SF4502 2.3 20.0 1.0
S4 B:SF4502 2.3 20.0 1.0
S2 B:SF4502 2.3 20.0 1.0
CB B:CYS379 2.7 96.1 1.0
FE1 B:SF4502 2.7 20.0 1.0
FE4 B:SF4502 2.7 20.0 1.0
FE2 B:SF4502 2.7 20.0 1.0
CA B:CYS379 3.6 96.1 1.0
N B:CYS379 3.6 96.1 1.0
SG B:CYS425 3.7 95.8 1.0
SG B:CYS382 3.8 97.4 1.0
N B:GLY380 3.8 96.2 1.0
N B:GLN381 3.9 97.3 1.0
S3 B:SF4502 3.9 20.0 1.0
C B:CYS379 4.0 96.1 1.0
SG B:CYS385 4.1 98.1 1.0
CD B:PRO223 4.2 97.1 1.0
CB B:GLN381 4.2 97.3 1.0
N B:CYS382 4.5 97.4 1.0
CA B:GLN381 4.6 97.3 1.0
CG B:PRO223 4.7 97.1 1.0
CB B:CYS385 4.7 98.1 1.0
OG B:SER378 4.7 97.2 1.0
CA B:GLY380 4.8 96.2 1.0
C B:SER378 4.8 97.2 1.0
CG1 B:ILE205 4.8 96.9 1.0
C B:GLY380 4.8 96.2 1.0
OE1 B:GLN381 4.8 97.3 1.0
CD1 B:ILE205 4.8 96.9 1.0
O B:CYS379 4.9 96.1 1.0

Iron binding site 4 out of 28 in 9bwd

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Iron binding site 4 out of 28 in the Cryo-Em Structure of Respiratory Supercomplex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Respiratory Supercomplex I within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe502

b:20.0
occ:1.00
FE4 B:SF4502 0.0 20.0 1.0
SG B:CYS382 1.2 97.4 1.0
S2 B:SF4502 2.3 20.0 1.0
S3 B:SF4502 2.3 20.0 1.0
S1 B:SF4502 2.3 20.0 1.0
FE2 B:SF4502 2.7 20.0 1.0
FE1 B:SF4502 2.7 20.0 1.0
FE3 B:SF4502 2.7 20.0 1.0
CB B:CYS382 2.9 97.4 1.0
N B:CYS382 3.4 97.4 1.0
CB B:CYS385 3.4 98.1 1.0
SG B:CYS425 3.6 95.8 1.0
SG B:CYS379 3.6 96.1 1.0
CA B:CYS382 3.7 97.4 1.0
S4 B:SF4502 3.9 20.0 1.0
SG B:CYS385 3.9 98.1 1.0
N B:ILE424 4.3 95.8 1.0
N B:CYS425 4.4 95.8 1.0
CB B:ILE424 4.4 95.8 1.0
O B:CYS382 4.4 97.4 1.0
C B:CYS382 4.5 97.4 1.0
C B:GLN381 4.5 97.3 1.0
CB B:THR423 4.6 96.9 1.0
N B:GLN381 4.7 97.3 1.0
CB B:GLN381 4.8 97.3 1.0
CA B:CYS385 4.8 98.1 1.0
CA B:ILE424 4.8 95.8 1.0
CG1 B:ILE424 4.9 95.8 1.0
CA B:GLN381 4.9 97.3 1.0
CB B:CYS425 4.9 95.8 1.0

Iron binding site 5 out of 28 in 9bwd

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Iron binding site 5 out of 28 in the Cryo-Em Structure of Respiratory Supercomplex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of Respiratory Supercomplex I within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe801

b:30.0
occ:1.00
FE1 G:SF4801 0.0 30.0 1.0
S2 G:SF4801 2.3 30.0 1.0
S3 G:SF4801 2.3 30.0 1.0
S4 G:SF4801 2.3 30.0 1.0
SG G:CYS131 2.3 97.4 1.0
CB G:CYS131 2.7 97.4 1.0
FE2 G:SF4801 2.7 30.0 1.0
FE3 G:SF4801 2.7 30.0 1.0
FE4 G:SF4801 2.7 30.0 1.0
S1 G:SF4801 3.9 30.0 1.0
CA G:CYS131 4.2 97.4 1.0
NE2 G:HIS124 4.3 98.5 1.0
CA G:CYS128 4.4 97.8 1.0
N G:GLY229 4.5 97.4 1.0
CB G:GLN133 4.5 95.6 1.0
CD G:ARG175 4.5 98.3 1.0
N G:CYS128 4.6 97.8 1.0
SG G:CYS128 4.7 97.8 1.0
SG G:CYS137 4.7 98.2 1.0
N G:GLY134 4.8 96.1 1.0
C G:ASP127 4.8 97.9 1.0
O G:ASP127 4.8 97.9 1.0
C G:CYS131 4.8 97.4 1.0
CA G:GLY229 4.8 97.4 1.0
NE G:ARG175 4.8 98.3 1.0
O G:CYS131 5.0 97.4 1.0

Iron binding site 6 out of 28 in 9bwd

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Iron binding site 6 out of 28 in the Cryo-Em Structure of Respiratory Supercomplex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of Respiratory Supercomplex I within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe801

b:30.0
occ:1.00
FE2 G:SF4801 0.0 30.0 1.0
SG G:CYS128 2.2 97.8 1.0
S1 G:SF4801 2.3 30.0 1.0
S3 G:SF4801 2.3 30.0 1.0
S4 G:SF4801 2.3 30.0 1.0
FE3 G:SF4801 2.7 30.0 1.0
FE1 G:SF4801 2.7 30.0 1.0
FE4 G:SF4801 2.7 30.0 1.0
CB G:CYS128 3.4 97.8 1.0
CA G:CYS128 3.4 97.8 1.0
NE2 G:GLN140 3.5 98.2 1.0
S2 G:SF4801 3.9 30.0 1.0
N G:CYS128 3.9 97.8 1.0
CE C:MET381 3.9 95.2 1.0
CG G:GLN140 4.1 98.2 1.0
CD G:GLN140 4.1 98.2 1.0
NE2 G:HIS124 4.3 98.5 1.0
CD2 G:HIS124 4.6 98.5 1.0
CB G:CYS131 4.6 97.4 1.0
C G:ASP127 4.7 97.9 1.0
CG1 C:ILE385 4.8 96.4 1.0
C G:CYS128 4.8 97.8 1.0
SG G:CYS137 4.9 98.2 1.0
SG G:CYS131 4.9 97.4 1.0

Iron binding site 7 out of 28 in 9bwd

Go back to Iron Binding Sites List in 9bwd
Iron binding site 7 out of 28 in the Cryo-Em Structure of Respiratory Supercomplex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of Respiratory Supercomplex I within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe801

b:30.0
occ:1.00
FE3 G:SF4801 0.0 30.0 1.0
NE2 G:HIS124 1.8 98.5 1.0
S4 G:SF4801 2.3 30.0 1.0
S2 G:SF4801 2.3 30.0 1.0
S1 G:SF4801 2.3 30.0 1.0
CD2 G:HIS124 2.7 98.5 1.0
FE2 G:SF4801 2.7 30.0 1.0
FE4 G:SF4801 2.7 30.0 1.0
FE1 G:SF4801 2.7 30.0 1.0
CE1 G:HIS124 2.9 98.5 1.0
S3 G:SF4801 3.9 30.0 1.0
CG G:HIS124 3.9 98.5 1.0
ND1 G:HIS124 3.9 98.5 1.0
CD2 G:LEU139 4.1 98.4 1.0
CE C:MET381 4.3 95.2 1.0
SG G:CYS137 4.6 98.2 1.0
SG G:CYS128 4.7 97.8 1.0
O G:PRO125 4.7 98.2 1.0
SG G:CYS131 4.8 97.4 1.0
CG1 G:VAL228 4.8 98.2 1.0
CB G:ARG175 4.9 98.3 1.0
CB G:VAL228 5.0 98.2 1.0

Iron binding site 8 out of 28 in 9bwd

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Iron binding site 8 out of 28 in the Cryo-Em Structure of Respiratory Supercomplex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of Respiratory Supercomplex I within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe801

b:30.0
occ:1.00
FE4 G:SF4801 0.0 30.0 1.0
SG G:CYS137 2.3 98.2 1.0
S1 G:SF4801 2.3 30.0 1.0
S2 G:SF4801 2.3 30.0 1.0
S3 G:SF4801 2.3 30.0 1.0
FE2 G:SF4801 2.7 30.0 1.0
FE3 G:SF4801 2.7 30.0 1.0
FE1 G:SF4801 2.7 30.0 1.0
CB G:CYS137 3.2 98.2 1.0
S4 G:SF4801 3.9 30.0 1.0
CG G:GLN140 4.1 98.2 1.0
NE2 G:HIS124 4.3 98.5 1.0
CD G:GLN140 4.4 98.2 1.0
SG G:CYS131 4.5 97.4 1.0
CB G:LEU139 4.5 98.4 1.0
NE2 G:GLN140 4.5 98.2 1.0
CA G:CYS137 4.6 98.2 1.0
CB G:GLN133 4.6 95.6 1.0
N G:GLN140 4.6 98.2 1.0
CG G:GLN133 4.7 95.6 1.0
SG G:CYS128 4.7 97.8 1.0
CB G:GLN140 4.8 98.2 1.0
N G:GLY229 4.8 97.4 1.0
CA G:VAL228 4.9 98.2 1.0
CD2 G:LEU139 4.9 98.4 1.0

Iron binding site 9 out of 28 in 9bwd

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Iron binding site 9 out of 28 in the Cryo-Em Structure of Respiratory Supercomplex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryo-Em Structure of Respiratory Supercomplex I within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe802

b:30.0
occ:1.00
FE1 G:SF4802 0.0 30.0 1.0
SG G:CYS176 2.3 98.2 1.0
S4 G:SF4802 2.3 30.0 1.0
S2 G:SF4802 2.3 30.0 1.0
S3 G:SF4802 2.3 30.0 1.0
FE4 G:SF4802 2.7 30.0 1.0
FE2 G:SF4802 2.7 30.0 1.0
FE3 G:SF4802 2.7 30.0 1.0
CB G:CYS176 3.4 98.2 1.0
S1 G:SF4802 3.9 30.0 1.0
CA G:CYS176 3.9 98.2 1.0
N G:GLN178 3.9 97.5 1.0
N G:ILE177 4.1 97.8 1.0
CA G:GLN178 4.3 97.5 1.0
CG2 G:VAL206 4.4 96.8 1.0
C G:CYS176 4.4 98.2 1.0
N G:CYS179 4.5 97.6 1.0
CB G:VAL206 4.5 96.8 1.0
CG1 G:VAL206 4.7 96.8 1.0
CB G:ALA230 4.7 97.8 1.0
SG G:CYS182 4.8 97.4 1.0
SG G:CYS179 4.8 97.6 1.0
SG G:CYS226 4.9 98.1 1.0
C G:ILE177 4.9 97.8 1.0
C G:GLN178 4.9 97.5 1.0

Iron binding site 10 out of 28 in 9bwd

Go back to Iron Binding Sites List in 9bwd
Iron binding site 10 out of 28 in the Cryo-Em Structure of Respiratory Supercomplex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryo-Em Structure of Respiratory Supercomplex I within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe802

b:30.0
occ:1.00
FE2 G:SF4802 0.0 30.0 1.0
SG G:CYS226 2.3 98.1 1.0
S1 G:SF4802 2.3 30.0 1.0
S4 G:SF4802 2.3 30.0 1.0
S3 G:SF4802 2.3 30.0 1.0
FE3 G:SF4802 2.7 30.0 1.0
FE1 G:SF4802 2.7 30.0 1.0
FE4 G:SF4802 2.7 30.0 1.0
CB G:CYS226 3.4 98.1 1.0
S2 G:SF4802 3.9 30.0 1.0
CB G:ALA230 4.1 97.8 1.0
CA G:CYS226 4.1 98.1 1.0
CD1 G:LEU231 4.3 97.9 1.0
CG G:LEU231 4.3 97.9 1.0
CG2 G:VAL228 4.4 98.2 1.0
SG G:CYS179 4.5 97.6 1.0
CD G:PRO227 4.7 97.9 1.0
SG G:CYS176 4.8 98.2 1.0
SG G:CYS182 4.8 97.4 1.0
N G:LEU231 4.9 97.9 1.0
C G:CYS226 4.9 98.1 1.0

Reference:

Z.Zhang, R.Maharjan, M.Tringides. Cryo-Em Structure of Respiratory Supercomplex I To Be Published.
Page generated: Sat Aug 23 02:56:57 2025

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