Iron in PDB 9epj: Dtpaa Y389F 41 Fs 10 Microjoules Xfel Pulse Data Collection
Protein crystallography data
The structure of Dtpaa Y389F 41 Fs 10 Microjoules Xfel Pulse Data Collection, PDB code: 9epj
was solved by
L.J.Williams,
R.L.Owen,
J.A.R.Worrall,
M.A.Hough,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
34.12 /
1.38
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
72.72,
68.2,
74.6,
90,
105.6,
90
|
R / Rfree (%)
|
17 /
19.4
|
Iron Binding Sites:
The binding sites of Iron atom in the Dtpaa Y389F 41 Fs 10 Microjoules Xfel Pulse Data Collection
(pdb code 9epj). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Dtpaa Y389F 41 Fs 10 Microjoules Xfel Pulse Data Collection, PDB code: 9epj:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 9epj
Go back to
Iron Binding Sites List in 9epj
Iron binding site 1 out
of 2 in the Dtpaa Y389F 41 Fs 10 Microjoules Xfel Pulse Data Collection
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Dtpaa Y389F 41 Fs 10 Microjoules Xfel Pulse Data Collection within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe501
b:11.3
occ:1.00
|
FE
|
A:HEM501
|
0.0
|
11.3
|
1.0
|
ND
|
A:HEM501
|
2.0
|
11.0
|
1.0
|
NA
|
A:HEM501
|
2.0
|
10.8
|
1.0
|
NB
|
A:HEM501
|
2.1
|
11.7
|
1.0
|
NC
|
A:HEM501
|
2.1
|
11.4
|
1.0
|
NE2
|
A:HIS326
|
2.1
|
12.2
|
1.0
|
O
|
A:HOH717
|
2.3
|
13.3
|
1.0
|
C1D
|
A:HEM501
|
3.0
|
11.8
|
1.0
|
C4D
|
A:HEM501
|
3.0
|
10.8
|
1.0
|
C1B
|
A:HEM501
|
3.0
|
11.7
|
1.0
|
C4A
|
A:HEM501
|
3.0
|
10.4
|
1.0
|
C4B
|
A:HEM501
|
3.0
|
12.2
|
1.0
|
C1A
|
A:HEM501
|
3.0
|
11.1
|
1.0
|
C4C
|
A:HEM501
|
3.1
|
12.1
|
1.0
|
CE1
|
A:HIS326
|
3.1
|
12.8
|
1.0
|
C1C
|
A:HEM501
|
3.1
|
11.7
|
1.0
|
CD2
|
A:HIS326
|
3.1
|
11.7
|
1.0
|
CHB
|
A:HEM501
|
3.4
|
11.6
|
1.0
|
CHD
|
A:HEM501
|
3.4
|
12.0
|
1.0
|
CHA
|
A:HEM501
|
3.4
|
11.2
|
1.0
|
CHC
|
A:HEM501
|
3.4
|
12.7
|
1.0
|
ND1
|
A:HIS326
|
4.2
|
12.1
|
1.0
|
C2D
|
A:HEM501
|
4.2
|
11.8
|
1.0
|
C3A
|
A:HEM501
|
4.2
|
11.0
|
1.0
|
CG
|
A:HIS326
|
4.3
|
11.8
|
1.0
|
C2A
|
A:HEM501
|
4.3
|
10.5
|
1.0
|
C3B
|
A:HEM501
|
4.3
|
12.3
|
1.0
|
C2B
|
A:HEM501
|
4.3
|
11.9
|
1.0
|
NH1
|
A:ARG342
|
4.3
|
12.3
|
1.0
|
C3D
|
A:HEM501
|
4.3
|
10.9
|
1.0
|
C3C
|
A:HEM501
|
4.3
|
12.1
|
1.0
|
C2C
|
A:HEM501
|
4.3
|
11.7
|
1.0
|
O
|
A:HOH662
|
4.3
|
14.7
|
1.0
|
OD1
|
A:ASP239
|
4.6
|
12.6
|
1.0
|
CD
|
A:ARG342
|
4.9
|
12.3
|
1.0
|
|
Iron binding site 2 out
of 2 in 9epj
Go back to
Iron Binding Sites List in 9epj
Iron binding site 2 out
of 2 in the Dtpaa Y389F 41 Fs 10 Microjoules Xfel Pulse Data Collection
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Dtpaa Y389F 41 Fs 10 Microjoules Xfel Pulse Data Collection within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe501
b:11.5
occ:1.00
|
FE
|
B:HEM501
|
0.0
|
11.5
|
1.0
|
ND
|
B:HEM501
|
2.0
|
11.5
|
1.0
|
NA
|
B:HEM501
|
2.0
|
11.7
|
1.0
|
NC
|
B:HEM501
|
2.0
|
11.5
|
1.0
|
NB
|
B:HEM501
|
2.1
|
12.4
|
1.0
|
NE2
|
B:HIS326
|
2.1
|
10.9
|
1.0
|
O
|
B:HOH703
|
2.3
|
13.1
|
0.5
|
C1D
|
B:HEM501
|
3.0
|
11.4
|
1.0
|
C4D
|
B:HEM501
|
3.0
|
12.4
|
1.0
|
C4A
|
B:HEM501
|
3.0
|
11.9
|
1.0
|
CE1
|
B:HIS326
|
3.0
|
11.8
|
1.0
|
C1B
|
B:HEM501
|
3.0
|
12.1
|
1.0
|
C4C
|
B:HEM501
|
3.0
|
12.5
|
1.0
|
C1A
|
B:HEM501
|
3.0
|
11.9
|
1.0
|
C4B
|
B:HEM501
|
3.0
|
11.8
|
1.0
|
CD2
|
B:HIS326
|
3.1
|
11.8
|
1.0
|
C1C
|
B:HEM501
|
3.1
|
11.5
|
1.0
|
CHB
|
B:HEM501
|
3.4
|
12.9
|
1.0
|
CHD
|
B:HEM501
|
3.4
|
11.6
|
1.0
|
CHA
|
B:HEM501
|
3.4
|
11.6
|
1.0
|
CHC
|
B:HEM501
|
3.4
|
11.0
|
1.0
|
O
|
B:HOH703
|
3.5
|
14.6
|
0.5
|
ND1
|
B:HIS326
|
4.2
|
13.0
|
1.0
|
CG
|
B:HIS326
|
4.2
|
11.1
|
1.0
|
C3D
|
B:HEM501
|
4.2
|
12.1
|
1.0
|
C2A
|
B:HEM501
|
4.2
|
11.8
|
1.0
|
C3C
|
B:HEM501
|
4.2
|
11.6
|
1.0
|
C2D
|
B:HEM501
|
4.2
|
12.5
|
1.0
|
C3A
|
B:HEM501
|
4.2
|
12.9
|
1.0
|
C2B
|
B:HEM501
|
4.3
|
12.7
|
1.0
|
C3B
|
B:HEM501
|
4.3
|
11.8
|
1.0
|
C2C
|
B:HEM501
|
4.3
|
12.0
|
1.0
|
NH1
|
B:ARG342
|
4.3
|
14.4
|
1.0
|
CD
|
B:ARG342
|
5.0
|
13.6
|
1.0
|
|
Reference:
L.J.Williams,
R.L.Owen,
J.A.R.Worrall,
M.A.Hough.
Dtpaa Y389F 41 Fs 10 Microjoules Xfel Pulse Data Collection To Be Published.
Page generated: Fri Aug 8 04:11:10 2025
|