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Iron in PDB 5ohe: Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide
Enzymatic activity of Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide
All present enzymatic activity of Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide:
2.7.13.3;
2.7.13.3;
Protein crystallography data
The structure of Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, PDB code: 5ohe
was solved by
T.Skalova,
P.Kolenko,
J.Dohnalek,
M.Stranava,
M.Martinkova,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 46.82 / 1.85 |
| Space group | P 41 21 2 |
| Cell size a, b, c (Å), α, β, γ (°) | 78.069, 78.069, 441.819, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 19.2 / 24.1 |
Other elements in 5ohe:
The structure of Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide also contains other interesting chemical elements:
| Chlorine | (Cl) | 4 atoms |
| Sodium | (Na) | 1 atom |
Iron Binding Sites:
The binding sites of Iron atom in the Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide
(pdb code 5ohe). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, PDB code: 5ohe:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
In total 8 binding sites of Iron where determined in the Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, PDB code: 5ohe:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
Iron binding site 1 out of 8 in 5ohe
Go back to
Iron Binding Sites List in 5ohe
Iron binding site 1 out
of 8 in the Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide within 5.0Å range:
|
Iron binding site 2 out of 8 in 5ohe
Go back to
Iron Binding Sites List in 5ohe
Iron binding site 2 out
of 8 in the Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide within 5.0Å range:
|
Iron binding site 3 out of 8 in 5ohe
Go back to
Iron Binding Sites List in 5ohe
Iron binding site 3 out
of 8 in the Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide within 5.0Å range:
|
Iron binding site 4 out of 8 in 5ohe
Go back to
Iron Binding Sites List in 5ohe
Iron binding site 4 out
of 8 in the Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide within 5.0Å range:
|
Iron binding site 5 out of 8 in 5ohe
Go back to
Iron Binding Sites List in 5ohe
Iron binding site 5 out
of 8 in the Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide within 5.0Å range:
|
Iron binding site 6 out of 8 in 5ohe
Go back to
Iron Binding Sites List in 5ohe
Iron binding site 6 out
of 8 in the Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide within 5.0Å range:
|
Iron binding site 7 out of 8 in 5ohe
Go back to
Iron Binding Sites List in 5ohe
Iron binding site 7 out
of 8 in the Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide within 5.0Å range:
|
Iron binding site 8 out of 8 in 5ohe
Go back to
Iron Binding Sites List in 5ohe
Iron binding site 8 out
of 8 in the Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide within 5.0Å range:
|
Reference:
M.Stranava,
P.Man,
T.Skalova,
P.Kolenko,
J.Blaha,
V.Fojtikova,
V.Martinek,
J.Dohnalek,
A.Lengalova,
M.Rosulek,
T.Shimizu,
M.Martinkova.
Coordination and Redox State-Dependent Structural Changes of the Heme-Based Oxygen Sensor Afgchk Associated with Intraprotein Signal Transduction. J. Biol. Chem. V. 292 20921 2017.
ISSN: ESSN 1083-351X
PubMed: 29092908
DOI: 10.1074/JBC.M117.817023
Page generated: Tue Aug 6 07:04:04 2024
ISSN: ESSN 1083-351X
PubMed: 29092908
DOI: 10.1074/JBC.M117.817023
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