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Iron in PDB 6s1m: Human Polymerase Delta Holoenzyme Conformer 1

Enzymatic activity of Human Polymerase Delta Holoenzyme Conformer 1

All present enzymatic activity of Human Polymerase Delta Holoenzyme Conformer 1:
2.7.7.7;

Other elements in 6s1m:

The structure of Human Polymerase Delta Holoenzyme Conformer 1 also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Human Polymerase Delta Holoenzyme Conformer 1 (pdb code 6s1m). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Human Polymerase Delta Holoenzyme Conformer 1, PDB code: 6s1m:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 6s1m

Go back to Iron Binding Sites List in 6s1m
Iron binding site 1 out of 4 in the Human Polymerase Delta Holoenzyme Conformer 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Human Polymerase Delta Holoenzyme Conformer 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1202

b:40.6
occ:1.00
FE1 A:SF41202 0.0 40.6 1.0
SG A:CYS1071 2.3 40.6 1.0
S3 A:SF41202 2.3 40.6 1.0
S2 A:SF41202 2.3 40.6 1.0
S4 A:SF41202 2.3 40.6 1.0
FE4 A:SF41202 2.7 40.6 1.0
FE3 A:SF41202 2.7 40.6 1.0
FE2 A:SF41202 2.7 40.6 1.0
CB A:CYS1071 3.3 40.6 1.0
O A:CYS1071 3.9 40.6 1.0
S1 A:SF41202 3.9 40.6 1.0
CG2 A:ILE1078 4.0 40.6 1.0
C A:CYS1071 4.4 40.6 1.0
SG A:CYS1076 4.4 30.9 1.0
CA A:CYS1071 4.4 40.6 1.0
CB A:SER1073 4.5 35.8 1.0
CB A:CYS1076 4.6 30.9 1.0
SG A:CYS1058 4.6 40.6 1.0
SG A:CYS1061 4.8 24.8 1.0
NH1 A:ARG1082 4.9 40.6 1.0
CB A:ILE1078 4.9 40.6 1.0
N A:SER1073 4.9 35.8 1.0

Iron binding site 2 out of 4 in 6s1m

Go back to Iron Binding Sites List in 6s1m
Iron binding site 2 out of 4 in the Human Polymerase Delta Holoenzyme Conformer 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Human Polymerase Delta Holoenzyme Conformer 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1202

b:40.6
occ:1.00
FE2 A:SF41202 0.0 40.6 1.0
CG2 A:ILE1078 2.3 40.6 1.0
SG A:CYS1076 2.3 30.9 1.0
S4 A:SF41202 2.3 40.6 1.0
S1 A:SF41202 2.3 40.6 1.0
S3 A:SF41202 2.3 40.6 1.0
CB A:ILE1078 2.4 40.6 1.0
FE3 A:SF41202 2.7 40.6 1.0
FE1 A:SF41202 2.7 40.6 1.0
FE4 A:SF41202 2.8 40.6 1.0
CG1 A:ILE1078 3.3 40.6 1.0
CB A:CYS1076 3.3 30.9 1.0
CA A:ILE1078 3.6 40.6 1.0
N A:PHE1079 3.9 40.6 1.0
S2 A:SF41202 3.9 40.6 1.0
N A:ILE1078 4.0 40.6 1.0
C A:ILE1078 4.0 40.6 1.0
CD1 A:ILE1078 4.6 40.6 1.0
CA A:CYS1076 4.7 30.9 1.0
SG A:CYS1058 4.8 40.6 1.0
SG A:CYS1071 4.9 40.6 1.0
C A:CYS1076 4.9 30.9 1.0
CA A:PHE1079 5.0 40.6 1.0

Iron binding site 3 out of 4 in 6s1m

Go back to Iron Binding Sites List in 6s1m
Iron binding site 3 out of 4 in the Human Polymerase Delta Holoenzyme Conformer 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Human Polymerase Delta Holoenzyme Conformer 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1202

b:40.6
occ:1.00
FE3 A:SF41202 0.0 40.6 1.0
S1 A:SF41202 2.3 40.6 1.0
SG A:CYS1058 2.3 40.6 1.0
S4 A:SF41202 2.3 40.6 1.0
S2 A:SF41202 2.3 40.6 1.0
CG2 A:ILE1078 2.3 40.6 1.0
FE2 A:SF41202 2.7 40.6 1.0
FE4 A:SF41202 2.7 40.6 1.0
FE1 A:SF41202 2.7 40.6 1.0
CB A:CYS1058 3.5 40.6 1.0
CA A:CYS1058 3.7 40.6 1.0
CB A:ILE1078 3.7 40.6 1.0
S3 A:SF41202 3.8 40.6 1.0
N A:CYS1058 4.4 40.6 1.0
CG1 A:ILE1078 4.5 40.6 1.0
NE A:ARG1082 4.5 40.6 1.0
SG A:CYS1061 4.8 24.8 1.0
SG A:CYS1071 4.8 40.6 1.0
C A:CYS1058 4.9 40.6 1.0
SG A:CYS1076 4.9 30.9 1.0
NH1 A:ARG1082 5.0 40.6 1.0
CB A:CYS1061 5.0 24.8 1.0
CA A:ILE1078 5.0 40.6 1.0

Iron binding site 4 out of 4 in 6s1m

Go back to Iron Binding Sites List in 6s1m
Iron binding site 4 out of 4 in the Human Polymerase Delta Holoenzyme Conformer 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Human Polymerase Delta Holoenzyme Conformer 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1202

b:40.6
occ:1.00
FE4 A:SF41202 0.0 40.6 1.0
S2 A:SF41202 2.3 40.6 1.0
S3 A:SF41202 2.3 40.6 1.0
S1 A:SF41202 2.3 40.6 1.0
SG A:CYS1061 2.4 24.8 1.0
FE1 A:SF41202 2.7 40.6 1.0
FE3 A:SF41202 2.7 40.6 1.0
FE2 A:SF41202 2.8 40.6 1.0
CB A:CYS1061 3.4 24.8 1.0
S4 A:SF41202 3.9 40.6 1.0
SG A:CYS1076 4.1 30.9 1.0
CG2 A:ILE1078 4.1 40.6 1.0
SG A:CYS1071 4.4 40.6 1.0
CB A:ILE1078 4.7 40.6 1.0
CA A:CYS1061 4.8 24.8 1.0
SG A:CYS1058 4.8 40.6 1.0
CA A:CYS1058 5.0 40.6 1.0

Reference:

C.Lancey, M.Tehseen, V.S.Raducanu, F.Rashid, N.Merino, T.J.Ragan, C.Savva, M.S.Zaher, A.Shirbini, F.J.Blanco, S.M.Hamdan, A.De Biasio. Structure of the Processive Human Pol Delta Holoenzyme To Be Published.
Page generated: Sun Dec 13 17:04:32 2020

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