Iron in PDB 7rww: Crystal Structure of A Zn-Bound RIDC1 Variant

The structure of Crystal Structure of A Zn-Bound RIDC1 Variant, PDB code: 7rww was solved by A.Kakkis, E.Golub, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.96 / 1.70
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	47.791, 86.913, 49.176, 90, 109.16, 90
R / Rfree (%)	17.5 / 20.8

The structure of Crystal Structure of A Zn-Bound RIDC1 Variant also contains other interesting chemical elements:

Zinc

(Zn)

7 atoms

The binding sites of Iron atom in the Crystal Structure of A Zn-Bound RIDC1 Variant (pdb code 7rww). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of A Zn-Bound RIDC1 Variant, PDB code: 7rww:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Crystal Structure of A Zn-Bound RIDC1 Variant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of A Zn-Bound RIDC1 Variant within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe204 b:16.2 occ:1.00 FE A:HEC204 0.0 16.2 1.0 NB A:HEC204 2.0 14.5 1.0 ND A:HEC204 2.0 16.2 1.0 NE2 A:HIS102 2.0 14.9 1.0 NC A:HEC204 2.0 13.8 1.0 NA A:HEC204 2.0 15.2 1.0 SD A:MET7 2.3 16.8 1.0 CE1 A:HIS102 3.0 17.2 1.0 C4D A:HEC204 3.0 14.5 1.0 C4B A:HEC204 3.0 12.8 1.0 C1C A:HEC204 3.0 15.1 1.0 C4A A:HEC204 3.0 14.8 1.0 CD2 A:HIS102 3.0 17.4 1.0 C1D A:HEC204 3.1 15.2 1.0 C1B A:HEC204 3.1 13.4 1.0 C1A A:HEC204 3.1 20.1 1.0 C4C A:HEC204 3.1 13.5 1.0 HE1 A:HIS102 3.1 20.6 1.0 HD2 A:HIS102 3.2 20.9 1.0 HG3 A:MET7 3.3 25.3 1.0 CHC A:HEC204 3.4 15.9 1.0 CE A:MET7 3.4 19.1 1.0 CHA A:HEC204 3.4 20.3 1.0 CHB A:HEC204 3.4 17.1 1.0 CG A:MET7 3.4 21.1 1.0 HE3 A:MET7 3.5 22.9 1.0 CHD A:HEC204 3.5 17.3 1.0 HE1 A:MET7 3.6 22.9 1.0 HB3 A:MET7 3.7 23.1 1.0 ND1 A:HIS102 4.1 17.8 1.0 CB A:MET7 4.1 19.2 1.0 CG A:HIS102 4.2 15.2 1.0 HG2 A:MET7 4.2 25.3 1.0 C3D A:HEC204 4.2 16.3 1.0 C2D A:HEC204 4.2 16.9 1.0 C2C A:HEC204 4.3 14.9 1.0 HE2 A:MET7 4.3 22.9 1.0 C3A A:HEC204 4.3 21.5 1.0 C3B A:HEC204 4.3 11.7 1.0 C2B A:HEC204 4.3 15.2 1.0 C2A A:HEC204 4.3 21.5 1.0 C3C A:HEC204 4.3 14.4 1.0 HHC A:HEC204 4.3 19.1 1.0 HHA A:HEC204 4.4 24.4 1.0 HHB A:HEC204 4.4 20.6 1.0 HD3 A:ARG106 4.5 30.6 1.0 HHD A:HEC204 4.5 20.8 1.0 HA A:MET7 4.6 24.6 1.0 HB3 A:CYS98 4.7 19.1 1.0 HD12 A:LEU10 4.8 21.5 1.0 HD1 A:HIS102 4.9 21.4 1.0 HB2 A:MET7 4.9 23.1 1.0 CA A:MET7 5.0 20.5 1.0

Iron binding site 2 out of 4 in the Crystal Structure of A Zn-Bound RIDC1 Variant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of A Zn-Bound RIDC1 Variant within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe203 b:17.6 occ:1.00 FE B:HEC203 0.0 17.6 1.0 ND B:HEC203 2.0 15.1 1.0 NC B:HEC203 2.0 12.3 1.0 NB B:HEC203 2.0 16.7 1.0 NE2 B:HIS102 2.0 20.1 1.0 NA B:HEC203 2.0 19.9 1.0 SD B:MET7 2.3 16.8 1.0 CE1 B:HIS102 3.0 22.8 1.0 C1D B:HEC203 3.0 11.8 1.0 C4B B:HEC203 3.0 15.5 1.0 C1C B:HEC203 3.0 18.3 1.0 C1A B:HEC203 3.0 21.4 1.0 CD2 B:HIS102 3.0 19.6 1.0 C4A B:HEC203 3.0 18.6 1.0 C4D B:HEC203 3.0 21.3 1.0 C4C B:HEC203 3.0 14.7 1.0 C1B B:HEC203 3.1 17.9 1.0 HE1 B:HIS102 3.2 27.3 1.0 HG3 B:MET7 3.2 25.5 1.0 HD2 B:HIS102 3.2 23.5 1.0 CE B:MET7 3.4 17.6 1.0 CHC B:HEC203 3.4 19.6 1.0 CG B:MET7 3.4 21.2 1.0 CHA B:HEC203 3.4 23.2 1.0 CHD B:HEC203 3.4 20.9 1.0 HE3 B:MET7 3.4 21.1 1.0 CHB B:HEC203 3.5 20.8 1.0 HE1 B:MET7 3.5 21.1 1.0 HB3 B:MET7 3.8 20.5 1.0 ND1 B:HIS102 4.1 21.9 1.0 HG2 B:MET7 4.1 25.5 1.0 CG B:HIS102 4.2 19.7 1.0 CB B:MET7 4.2 17.1 1.0 C2A B:HEC203 4.2 18.7 1.0 HE2 B:MET7 4.2 21.1 1.0 C2C B:HEC203 4.2 13.5 1.0 C3A B:HEC203 4.3 18.6 1.0 C2D B:HEC203 4.3 18.7 1.0 C3D B:HEC203 4.3 23.1 1.0 C3B B:HEC203 4.3 14.2 1.0 C3C B:HEC203 4.3 16.8 1.0 C2B B:HEC203 4.3 17.9 1.0 HHC B:HEC203 4.4 23.5 1.0 HHA B:HEC203 4.4 27.8 1.0 HHD B:HEC203 4.4 25.0 1.0 HD22 B:LEU10 4.4 15.6 0.1 HHB B:HEC203 4.4 25.0 1.0 HA B:MET7 4.6 18.8 1.0 HD2 B:ARG106 4.6 33.9 1.0 HD12 B:LEU10 4.8 18.3 0.9 HB3 B:CYS98 4.8 24.9 1.0 HD1 B:HIS102 4.9 26.2 1.0 HB2 B:MET7 4.9 20.5 1.0

Iron binding site 3 out of 4 in the Crystal Structure of A Zn-Bound RIDC1 Variant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of A Zn-Bound RIDC1 Variant within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe204 b:17.6 occ:1.00 FE C:HEC204 0.0 17.6 1.0 ND C:HEC204 1.9 15.0 1.0 NE2 C:HIS102 2.0 15.9 1.0 NC C:HEC204 2.0 13.2 1.0 NB C:HEC204 2.0 15.3 1.0 NA C:HEC204 2.1 17.4 1.0 SD C:MET7 2.3 18.9 1.0 CE1 C:HIS102 2.9 21.5 1.0 C4D C:HEC204 3.0 22.1 1.0 C1D C:HEC204 3.0 13.9 1.0 CD2 C:HIS102 3.0 16.7 1.0 C1C C:HEC204 3.0 17.4 1.0 C4B C:HEC204 3.0 15.2 1.0 C4C C:HEC204 3.1 14.3 1.0 C1B C:HEC204 3.1 15.5 1.0 C1A C:HEC204 3.1 21.6 1.0 C4A C:HEC204 3.1 18.9 1.0 HE1 C:HIS102 3.1 25.8 1.0 HD2 C:HIS102 3.2 20.0 1.0 CE C:MET7 3.3 22.2 1.0 HE3 C:MET7 3.3 26.6 1.0 CHA C:HEC204 3.4 21.1 1.0 CHC C:HEC204 3.4 16.6 1.0 HG3 C:MET7 3.4 25.5 1.0 HE1 C:MET7 3.4 26.6 1.0 CHD C:HEC204 3.4 17.2 1.0 CHB C:HEC204 3.5 18.6 1.0 CG C:MET7 3.5 21.2 1.0 HB3 C:MET7 3.7 26.2 1.0 ND1 C:HIS102 4.1 16.5 1.0 CG C:HIS102 4.1 15.5 1.0 HE2 C:MET7 4.2 26.6 1.0 C2D C:HEC204 4.2 21.9 1.0 C3D C:HEC204 4.2 23.9 1.0 CB C:MET7 4.2 21.8 1.0 C2C C:HEC204 4.2 19.9 1.0 C3C C:HEC204 4.2 16.0 1.0 C2B C:HEC204 4.3 15.4 1.0 C3B C:HEC204 4.3 12.2 1.0 HG2 C:MET7 4.3 25.5 1.0 C2A C:HEC204 4.3 18.8 1.0 C3A C:HEC204 4.3 22.6 1.0 HHC C:HEC204 4.4 19.9 1.0 HHA C:HEC204 4.4 25.3 1.0 HHD C:HEC204 4.4 20.6 1.0 HHB C:HEC204 4.4 22.4 1.0 HD2 C:ARG106 4.5 33.3 1.0 HD12 C:LEU10 4.5 22.9 1.0 HA C:MET7 4.7 22.8 1.0 HB3 C:CYS98 4.8 21.6 1.0 HD1 C:HIS102 4.8 19.8 1.0 HB2 C:MET7 4.9 26.2 1.0

Iron binding site 4 out of 4 in the Crystal Structure of A Zn-Bound RIDC1 Variant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of A Zn-Bound RIDC1 Variant within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe202 b:16.3 occ:1.00 FE D:HEC202 0.0 16.3 1.0 ND D:HEC202 1.9 16.8 1.0 NB D:HEC202 2.0 17.0 1.0 NA D:HEC202 2.0 19.0 1.0 NE2 D:HIS102 2.0 14.3 1.0 NC D:HEC202 2.0 15.3 1.0 SD D:MET7 2.4 16.8 1.0 C4A D:HEC202 3.0 14.2 1.0 CE1 D:HIS102 3.0 24.0 1.0 C1D D:HEC202 3.0 13.8 1.0 C4D D:HEC202 3.0 22.2 1.0 CD2 D:HIS102 3.0 15.4 1.0 C1B D:HEC202 3.0 16.1 1.0 C4B D:HEC202 3.0 15.3 1.0 C1A D:HEC202 3.0 22.0 1.0 C4C D:HEC202 3.1 11.3 1.0 C1C D:HEC202 3.1 17.4 1.0 HE1 D:HIS102 3.2 28.8 1.0 HD2 D:HIS102 3.2 18.4 1.0 HE3 D:MET7 3.3 28.0 1.0 CE D:MET7 3.3 23.3 1.0 CHB D:HEC202 3.3 15.4 1.0 HG3 D:MET7 3.4 21.0 1.0 CHA D:HEC202 3.4 23.1 1.0 CHD D:HEC202 3.4 17.1 1.0 CHC D:HEC202 3.4 17.3 1.0 HE1 D:MET7 3.5 28.0 1.0 CG D:MET7 3.5 17.5 1.0 HB3 D:MET7 3.9 21.9 1.0 ND1 D:HIS102 4.1 21.3 1.0 CG D:HIS102 4.1 20.1 1.0 HE2 D:MET7 4.2 28.0 1.0 C3A D:HEC202 4.2 22.3 1.0 C2A D:HEC202 4.2 22.1 1.0 C3D D:HEC202 4.2 20.8 1.0 C2B D:HEC202 4.2 20.7 1.0 C3B D:HEC202 4.2 17.9 1.0 C2D D:HEC202 4.2 21.5 1.0 HG2 D:MET7 4.3 21.0 1.0 C2C D:HEC202 4.3 15.6 1.0 CB D:MET7 4.3 18.2 1.0 C3C D:HEC202 4.3 18.1 1.0 HHB D:HEC202 4.3 18.4 1.0 HHA D:HEC202 4.4 27.7 1.0 HHD D:HEC202 4.4 20.5 1.0 HHC D:HEC202 4.4 20.8 1.0 HA D:MET7 4.6 20.8 1.0 HB3 D:CYS98 4.7 23.1 1.0 HD12 D:LEU10 4.8 21.2 1.0 HD2 D:ARG106 4.8 52.3 1.0 HD1 D:HIS102 4.9 25.6 1.0

A.Kakkis, E.Golub. Crystal Structure of A Zn-Bound RIDC1 Variant To Be Published.