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Iron in PDB 8dw7: Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G)
Enzymatic activity of Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G)
All present enzymatic activity of Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G):
3.2.2.31;
3.2.2.31;
Protein crystallography data
The structure of Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G), PDB code: 8dw7
was solved by
M.Demir,
L.P.Russelburg,
M.P.Horvath,
S.S.David,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 72.80 / 1.96 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 48.89, 137.21, 74.16, 90, 101, 90 |
| R / Rfree (%) | 20.3 / 23.4 |
Other elements in 8dw7:
The structure of Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G) also contains other interesting chemical elements:
| Calcium | (Ca) | 2 atoms |
Iron Binding Sites:
The binding sites of Iron atom in the Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G)
(pdb code 8dw7). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G), PDB code: 8dw7:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
In total 8 binding sites of Iron where determined in the Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G), PDB code: 8dw7:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
Iron binding site 1 out of 8 in 8dw7
Go back to
Iron Binding Sites List in 8dw7
Iron binding site 1 out
of 8 in the Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G) within 5.0Å range:
|
Iron binding site 2 out of 8 in 8dw7
Go back to
Iron Binding Sites List in 8dw7
Iron binding site 2 out
of 8 in the Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G) within 5.0Å range:
|
Iron binding site 3 out of 8 in 8dw7
Go back to
Iron Binding Sites List in 8dw7
Iron binding site 3 out
of 8 in the Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G) within 5.0Å range:
|
Iron binding site 4 out of 8 in 8dw7
Go back to
Iron Binding Sites List in 8dw7
Iron binding site 4 out
of 8 in the Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G) within 5.0Å range:
|
Iron binding site 5 out of 8 in 8dw7
Go back to
Iron Binding Sites List in 8dw7
Iron binding site 5 out
of 8 in the Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G) within 5.0Å range:
|
Iron binding site 6 out of 8 in 8dw7
Go back to
Iron Binding Sites List in 8dw7
Iron binding site 6 out
of 8 in the Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G) within 5.0Å range:
|
Iron binding site 7 out of 8 in 8dw7
Go back to
Iron Binding Sites List in 8dw7
Iron binding site 7 out
of 8 in the Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G) within 5.0Å range:
|
Iron binding site 8 out of 8 in 8dw7
Go back to
Iron Binding Sites List in 8dw7
Iron binding site 8 out
of 8 in the Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G) within 5.0Å range:
|
Reference:
M.Demir,
L.P.Russelburg,
J.Lin,
C.H.Trasvina-Arenas,
B.Huang,
P.K.Yuen,
M.P.Horvath,
S.S.David.
Structural Snapshots of Base Excision Mechanism By Dna Glycosylase Muty Reveal Retention of Stereochemistry For Abasic Site Product Formation To Be Published.
Page generated: Thu Aug 7 15:54:10 2025
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