Iron in PDB 8f68: E. Coli Cytochrome BO3 Ubiquinol Oxidase Monomer

Enzymatic activity of E. Coli Cytochrome BO3 Ubiquinol Oxidase Monomer

All present enzymatic activity of E. Coli Cytochrome BO3 Ubiquinol Oxidase Monomer:
7.1.1.3;

Other elements in 8f68:

The structure of E. Coli Cytochrome BO3 Ubiquinol Oxidase Monomer also contains other interesting chemical elements:

Copper (Cu) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the E. Coli Cytochrome BO3 Ubiquinol Oxidase Monomer (pdb code 8f68). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the E. Coli Cytochrome BO3 Ubiquinol Oxidase Monomer, PDB code: 8f68:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 8f68

Go back to Iron Binding Sites List in 8f68
Iron binding site 1 out of 2 in the E. Coli Cytochrome BO3 Ubiquinol Oxidase Monomer


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of E. Coli Cytochrome BO3 Ubiquinol Oxidase Monomer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1001

b:16.2
occ:1.00
FE A:HEM1001 0.0 16.2 1.0
ND A:HEM1001 1.9 16.2 1.0
NA A:HEM1001 2.0 16.2 1.0
NE2 A:HIS421 2.0 16.3 1.0
NC A:HEM1001 2.1 16.2 1.0
NB A:HEM1001 2.1 16.2 1.0
NE2 A:HIS106 2.6 16.9 1.0
CE1 A:HIS421 2.6 16.3 1.0
C4D A:HEM1001 2.9 16.2 1.0
C1D A:HEM1001 2.9 16.2 1.0
C1A A:HEM1001 2.9 16.2 1.0
C4C A:HEM1001 3.0 16.2 1.0
C4A A:HEM1001 3.0 16.2 1.0
C1B A:HEM1001 3.1 16.2 1.0
C1C A:HEM1001 3.1 16.2 1.0
C4B A:HEM1001 3.2 16.2 1.0
CD2 A:HIS106 3.2 16.9 1.0
CD2 A:HIS421 3.2 16.3 1.0
CHA A:HEM1001 3.3 16.2 1.0
CHD A:HEM1001 3.4 16.2 1.0
CHB A:HEM1001 3.5 16.2 1.0
CHC A:HEM1001 3.6 16.2 1.0
CE1 A:HIS106 3.7 17.0 1.0
ND1 A:HIS421 3.8 16.3 1.0
C2A A:HEM1001 4.2 16.3 1.0
C3D A:HEM1001 4.2 16.2 1.0
CG A:HIS421 4.2 16.3 1.0
C2D A:HEM1001 4.2 16.2 1.0
C3A A:HEM1001 4.2 16.3 1.0
C3C A:HEM1001 4.2 16.2 1.0
C2C A:HEM1001 4.3 16.2 1.0
C2B A:HEM1001 4.4 16.2 1.0
C3B A:HEM1001 4.4 16.2 1.0
CG A:HIS106 4.5 17.0 1.0
ND1 A:HIS106 4.7 17.0 1.0
CE1 A:PHE420 4.7 16.4 1.0
CZ A:PHE420 4.9 16.4 1.0

Iron binding site 2 out of 2 in 8f68

Go back to Iron Binding Sites List in 8f68
Iron binding site 2 out of 2 in the E. Coli Cytochrome BO3 Ubiquinol Oxidase Monomer


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of E. Coli Cytochrome BO3 Ubiquinol Oxidase Monomer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1002

b:20.4
occ:1.00
FE A:HEO1002 0.0 20.4 1.0
NA A:HEO1002 2.0 20.4 1.0
NC A:HEO1002 2.0 20.5 1.0
ND A:HEO1002 2.0 20.4 1.0
NB A:HEO1002 2.0 20.6 1.0
NE2 A:HIS419 2.1 16.2 1.0
CD2 A:HIS419 2.6 16.1 1.0
C4C A:HEO1002 3.0 20.4 1.0
C1D A:HEO1002 3.0 20.4 1.0
C4A A:HEO1002 3.0 20.4 1.0
C1B A:HEO1002 3.1 20.6 1.0
C1C A:HEO1002 3.2 20.5 1.0
C1A A:HEO1002 3.2 20.3 1.0
C4B A:HEO1002 3.2 20.7 1.0
C4D A:HEO1002 3.2 20.4 1.0
CE1 A:HIS419 3.3 16.2 1.0
CHD A:HEO1002 3.3 20.4 1.0
CHB A:HEO1002 3.4 20.5 1.0
CHC A:HEO1002 3.7 20.6 1.0
CHA A:HEO1002 3.7 20.3 1.0
CG A:HIS419 3.9 16.2 1.0
CG2 A:VAL423 4.2 17.0 1.0
ND1 A:HIS419 4.2 16.2 1.0
C3C A:HEO1002 4.3 20.5 1.0
C3A A:HEO1002 4.3 20.2 1.0
C2D A:HEO1002 4.4 20.3 1.0
C2C A:HEO1002 4.4 20.5 1.0
C2B A:HEO1002 4.4 20.7 1.0
C2A A:HEO1002 4.4 20.2 1.0
C3B A:HEO1002 4.5 20.9 1.0
C3D A:HEO1002 4.5 20.4 1.0
CA A:PHE420 4.8 16.3 1.0
CB A:PHE420 4.8 16.3 1.0

Reference:

Y.Guo, E.Karimullina, D.Borek, A.Savchenko. Monomer and Dimer Structures of E. Coli Cytochrome BO3 Ubiquinol Oxidase To Be Published.
Page generated: Wed Apr 5 08:59:11 2023

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