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Iron in PDB 8uot: Composite Map of Picdeltatfiik FORM1

Enzymatic activity of Composite Map of Picdeltatfiik FORM1

All present enzymatic activity of Composite Map of Picdeltatfiik FORM1:
2.7.7.6; 3.6.4.12; 5.6.2.3;

Other elements in 8uot:

The structure of Composite Map of Picdeltatfiik FORM1 also contains other interesting chemical elements:

Zinc (Zn) 15 atoms
Magnesium (Mg) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Composite Map of Picdeltatfiik FORM1 (pdb code 8uot). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Composite Map of Picdeltatfiik FORM1, PDB code: 8uot:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 8uot

Go back to Iron Binding Sites List in 8uot
Iron binding site 1 out of 4 in the Composite Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Composite Map of Picdeltatfiik FORM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Fe801

b:223.7
occ:1.00
 FE1 0:SF4801 0.0 223.7 1.0
SG 0:CYS115 1.2 131.2 1.0
S2 0:SF4801 2.2 223.7 1.0
S3 0:SF4801 2.2 223.7 1.0
S4 0:SF4801 2.3 223.7 1.0
CB 0:CYS115 2.5 131.2 1.0
FE4 0:SF4801 2.7 223.7 1.0
FE3 0:SF4801 2.7 223.7 1.0
FE2 0:SF4801 2.7 223.7 1.0
CA 0:CYS115 3.0 131.2 1.0
SG 0:CYS191 3.3 163.4 1.0
C 0:CYS115 3.5 131.2 1.0
N 0:LEU116 3.7 118.0 1.0
S1 0:SF4801 3.8 223.7 1.0
N 0:HIS117 3.9 115.0 1.0
NE 0:ARG111 4.0 173.3 1.0
CD 0:ARG111 4.1 173.3 1.0
CB 0:HIS117 4.1 115.0 1.0
O 0:CYS115 4.3 131.2 1.0
N 0:CYS115 4.4 131.2 1.0
CB 0:CYS191 4.5 163.4 1.0
SG 0:CYS133 4.5 154.3 1.0
CG 0:ARG111 4.5 173.3 1.0
CA 0:HIS117 4.7 115.0 1.0
SG 0:CYS156 4.7 151.3 1.0
C 0:LEU116 4.9 118.0 1.0
CA 0:LEU116 4.9 118.0 1.0

Iron binding site 2 out of 4 in 8uot

Go back to Iron Binding Sites List in 8uot
Iron binding site 2 out of 4 in the Composite Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Composite Map of Picdeltatfiik FORM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Fe801

b:223.7
occ:1.00
 FE2 0:SF4801 0.0 223.7 1.0
SG 0:CYS156 2.2 151.3 1.0
S3 0:SF4801 2.3 223.7 1.0
S4 0:SF4801 2.3 223.7 1.0
S1 0:SF4801 2.3 223.7 1.0
FE1 0:SF4801 2.7 223.7 1.0
FE4 0:SF4801 2.8 223.7 1.0
FE3 0:SF4801 2.8 223.7 1.0
CB 0:HIS117 3.0 115.0 1.0
CB 0:CYS156 3.2 151.3 1.0
SG 0:CYS115 3.2 131.2 1.0
ND1 0:HIS117 3.3 115.0 1.0
CG 0:HIS117 3.4 115.0 1.0
S2 0:SF4801 3.9 223.7 1.0
CA 0:HIS117 4.0 115.0 1.0
N 0:HIS117 4.1 115.0 1.0
CE1 0:HIS117 4.4 115.0 1.0
CA 0:CYS156 4.5 151.3 1.0
SG 0:CYS133 4.6 154.3 1.0
CD1 0:TYR158 4.6 151.8 1.0
CD2 0:HIS117 4.6 115.0 1.0
SD 0:MET136 4.6 163.1 1.0
SG 0:CYS191 4.8 163.4 1.0
CB 0:TYR158 4.9 151.8 1.0
CB 0:CYS115 4.9 131.2 1.0

Iron binding site 3 out of 4 in 8uot

Go back to Iron Binding Sites List in 8uot
Iron binding site 3 out of 4 in the Composite Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Composite Map of Picdeltatfiik FORM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Fe801

b:223.7
occ:1.00
 FE3 0:SF4801 0.0 223.7 1.0
SG 0:CYS133 2.2 154.3 1.0
S1 0:SF4801 2.3 223.7 1.0
S4 0:SF4801 2.3 223.7 1.0
S2 0:SF4801 2.3 223.7 1.0
FE1 0:SF4801 2.7 223.7 1.0
FE4 0:SF4801 2.7 223.7 1.0
FE2 0:SF4801 2.8 223.7 1.0
NE 0:ARG111 3.2 173.3 1.0
SG 0:CYS115 3.2 131.2 1.0
CB 0:CYS133 3.6 154.3 1.0
CE2 0:PHE194 3.7 173.8 1.0
S3 0:SF4801 3.9 223.7 1.0
SG 0:CYS191 3.9 163.4 1.0
NH2 0:ARG111 4.0 173.3 1.0
CD 0:ARG111 4.0 173.3 1.0
CZ 0:ARG111 4.0 173.3 1.0
OG1 0:THR137 4.2 145.8 1.0
CD2 0:PHE194 4.3 173.8 1.0
SG 0:CYS156 4.4 151.3 1.0
CA 0:CYS133 4.5 154.3 1.0
CZ 0:PHE194 4.5 173.8 1.0
NH2 0:ARG134 4.6 165.7 1.0
CB 0:CYS115 4.7 131.2 1.0
CB 0:CYS156 4.7 151.3 1.0
CB 0:CYS191 4.8 163.4 1.0
CG2 0:THR137 4.9 145.8 1.0
O 0:CYS133 5.0 154.3 1.0
CG 0:ARG111 5.0 173.3 1.0

Iron binding site 4 out of 4 in 8uot

Go back to Iron Binding Sites List in 8uot
Iron binding site 4 out of 4 in the Composite Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Composite Map of Picdeltatfiik FORM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Fe801

b:223.7
occ:1.00
 FE4 0:SF4801 0.0 223.7 1.0
SG 0:CYS191 2.2 163.4 1.0
S3 0:SF4801 2.3 223.7 1.0
S1 0:SF4801 2.3 223.7 1.0
S2 0:SF4801 2.3 223.7 1.0
CB 0:CYS191 2.4 163.4 1.0
FE1 0:SF4801 2.7 223.7 1.0
FE3 0:SF4801 2.7 223.7 1.0
FE2 0:SF4801 2.8 223.7 1.0
SG 0:CYS156 3.6 151.3 1.0
CA 0:CYS191 3.6 163.4 1.0
CD2 0:PHE194 3.8 173.8 1.0
SG 0:CYS115 3.8 131.2 1.0
S4 0:SF4801 3.9 223.7 1.0
CE2 0:PHE194 3.9 173.8 1.0
CB 0:TYR158 4.0 151.8 1.0
N 0:CYS191 4.4 163.4 1.0
N 0:HIS159 4.5 184.4 1.0
CB 0:CYS156 4.6 151.3 1.0
CB 0:HIS159 4.7 184.4 1.0
C 0:CYS191 4.7 163.4 1.0
CG 0:TYR158 4.7 151.8 1.0
NE 0:ARG111 4.9 173.3 1.0
SG 0:CYS133 4.9 154.3 1.0
CD1 0:TYR158 5.0 151.8 1.0
C 0:TYR158 5.0 151.8 1.0

Reference:

C.Yang, P.Basnet, S.Sharmin, H.Shen, C.D.Kaplan, K.Murakami. Transcription Start Site Scanning Requires the Fungi-Specific Hydrophobic Loop of TFB3. Nucleic Acids Res. 2024.
ISSN: ESSN 1362-4962
PubMed: 39287137
DOI: 10.1093/NAR/GKAE805
Page generated: Thu Oct 31 20:46:06 2024

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