Iron in PDB 8uot: Composite Map of Picdeltatfiik FORM1

Enzymatic activity of Composite Map of Picdeltatfiik FORM1

All present enzymatic activity of Composite Map of Picdeltatfiik FORM1:
2.7.7.6; 3.6.4.12; 5.6.2.3;

Other elements in 8uot:

The structure of Composite Map of Picdeltatfiik FORM1 also contains other interesting chemical elements:

Zinc (Zn) 15 atoms
Magnesium (Mg) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Composite Map of Picdeltatfiik FORM1 (pdb code 8uot). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Composite Map of Picdeltatfiik FORM1, PDB code: 8uot:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 8uot

Go back to Iron Binding Sites List in 8uot
Iron binding site 1 out of 4 in the Composite Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Composite Map of Picdeltatfiik FORM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Fe801

b:223.7
occ:1.00
 FE1 0:SF4801 0.0 223.7 1.0
SG 0:CYS115 1.2 131.2 1.0
S2 0:SF4801 2.2 223.7 1.0
S3 0:SF4801 2.2 223.7 1.0
S4 0:SF4801 2.3 223.7 1.0
CB 0:CYS115 2.5 131.2 1.0
FE4 0:SF4801 2.7 223.7 1.0
FE3 0:SF4801 2.7 223.7 1.0
FE2 0:SF4801 2.7 223.7 1.0
CA 0:CYS115 3.0 131.2 1.0
SG 0:CYS191 3.3 163.4 1.0
C 0:CYS115 3.5 131.2 1.0
N 0:LEU116 3.7 118.0 1.0
S1 0:SF4801 3.8 223.7 1.0
N 0:HIS117 3.9 115.0 1.0
NE 0:ARG111 4.0 173.3 1.0
CD 0:ARG111 4.1 173.3 1.0
CB 0:HIS117 4.1 115.0 1.0
O 0:CYS115 4.3 131.2 1.0
N 0:CYS115 4.4 131.2 1.0
CB 0:CYS191 4.5 163.4 1.0
SG 0:CYS133 4.5 154.3 1.0
CG 0:ARG111 4.5 173.3 1.0
CA 0:HIS117 4.7 115.0 1.0
SG 0:CYS156 4.7 151.3 1.0
C 0:LEU116 4.9 118.0 1.0
CA 0:LEU116 4.9 118.0 1.0

Iron binding site 2 out of 4 in 8uot

Go back to Iron Binding Sites List in 8uot
Iron binding site 2 out of 4 in the Composite Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Composite Map of Picdeltatfiik FORM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Fe801

b:223.7
occ:1.00
 FE2 0:SF4801 0.0 223.7 1.0
SG 0:CYS156 2.2 151.3 1.0
S3 0:SF4801 2.3 223.7 1.0
S4 0:SF4801 2.3 223.7 1.0
S1 0:SF4801 2.3 223.7 1.0
FE1 0:SF4801 2.7 223.7 1.0
FE4 0:SF4801 2.8 223.7 1.0
FE3 0:SF4801 2.8 223.7 1.0
CB 0:HIS117 3.0 115.0 1.0
CB 0:CYS156 3.2 151.3 1.0
SG 0:CYS115 3.2 131.2 1.0
ND1 0:HIS117 3.3 115.0 1.0
CG 0:HIS117 3.4 115.0 1.0
S2 0:SF4801 3.9 223.7 1.0
CA 0:HIS117 4.0 115.0 1.0
N 0:HIS117 4.1 115.0 1.0
CE1 0:HIS117 4.4 115.0 1.0
CA 0:CYS156 4.5 151.3 1.0
SG 0:CYS133 4.6 154.3 1.0
CD1 0:TYR158 4.6 151.8 1.0
CD2 0:HIS117 4.6 115.0 1.0
SD 0:MET136 4.6 163.1 1.0
SG 0:CYS191 4.8 163.4 1.0
CB 0:TYR158 4.9 151.8 1.0
CB 0:CYS115 4.9 131.2 1.0

Iron binding site 3 out of 4 in 8uot

Go back to Iron Binding Sites List in 8uot
Iron binding site 3 out of 4 in the Composite Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Composite Map of Picdeltatfiik FORM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Fe801

b:223.7
occ:1.00
 FE3 0:SF4801 0.0 223.7 1.0
SG 0:CYS133 2.2 154.3 1.0
S1 0:SF4801 2.3 223.7 1.0
S4 0:SF4801 2.3 223.7 1.0
S2 0:SF4801 2.3 223.7 1.0
FE1 0:SF4801 2.7 223.7 1.0
FE4 0:SF4801 2.7 223.7 1.0
FE2 0:SF4801 2.8 223.7 1.0
NE 0:ARG111 3.2 173.3 1.0
SG 0:CYS115 3.2 131.2 1.0
CB 0:CYS133 3.6 154.3 1.0
CE2 0:PHE194 3.7 173.8 1.0
S3 0:SF4801 3.9 223.7 1.0
SG 0:CYS191 3.9 163.4 1.0
NH2 0:ARG111 4.0 173.3 1.0
CD 0:ARG111 4.0 173.3 1.0
CZ 0:ARG111 4.0 173.3 1.0
OG1 0:THR137 4.2 145.8 1.0
CD2 0:PHE194 4.3 173.8 1.0
SG 0:CYS156 4.4 151.3 1.0
CA 0:CYS133 4.5 154.3 1.0
CZ 0:PHE194 4.5 173.8 1.0
NH2 0:ARG134 4.6 165.7 1.0
CB 0:CYS115 4.7 131.2 1.0
CB 0:CYS156 4.7 151.3 1.0
CB 0:CYS191 4.8 163.4 1.0
CG2 0:THR137 4.9 145.8 1.0
O 0:CYS133 5.0 154.3 1.0
CG 0:ARG111 5.0 173.3 1.0

Iron binding site 4 out of 4 in 8uot

Go back to Iron Binding Sites List in 8uot
Iron binding site 4 out of 4 in the Composite Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Composite Map of Picdeltatfiik FORM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Fe801

b:223.7
occ:1.00
 FE4 0:SF4801 0.0 223.7 1.0
SG 0:CYS191 2.2 163.4 1.0
S3 0:SF4801 2.3 223.7 1.0
S1 0:SF4801 2.3 223.7 1.0
S2 0:SF4801 2.3 223.7 1.0
CB 0:CYS191 2.4 163.4 1.0
FE1 0:SF4801 2.7 223.7 1.0
FE3 0:SF4801 2.7 223.7 1.0
FE2 0:SF4801 2.8 223.7 1.0
SG 0:CYS156 3.6 151.3 1.0
CA 0:CYS191 3.6 163.4 1.0
CD2 0:PHE194 3.8 173.8 1.0
SG 0:CYS115 3.8 131.2 1.0
S4 0:SF4801 3.9 223.7 1.0
CE2 0:PHE194 3.9 173.8 1.0
CB 0:TYR158 4.0 151.8 1.0
N 0:CYS191 4.4 163.4 1.0
N 0:HIS159 4.5 184.4 1.0
CB 0:CYS156 4.6 151.3 1.0
CB 0:HIS159 4.7 184.4 1.0
C 0:CYS191 4.7 163.4 1.0
CG 0:TYR158 4.7 151.8 1.0
NE 0:ARG111 4.9 173.3 1.0
SG 0:CYS133 4.9 154.3 1.0
CD1 0:TYR158 5.0 151.8 1.0
C 0:TYR158 5.0 151.8 1.0

Reference:

C.Yang, P.Basnet, S.Sharmin, H.Shen, C.D.Kaplan, K.Murakami. Transcription Start Site Scanning Requires the Fungi-Specific Hydrophobic Loop of TFB3. Nucleic Acids Res. 2024.
ISSN: ESSN 1362-4962
PubMed: 39287137
DOI: 10.1093/NAR/GKAE805
Page generated: Thu Oct 31 20:46:06 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy